| 08:15–09:15 |
Genomics Community UK Networking Breakfast - G.06 |
|
| 08:30–09:20 |
Tea & Coffee |
|
| 09:20–11:00 |
Plant and Animal Genomics (Chair: Al Darby) |
Computational Biology and AI (Chair: Sion Bayliss) |
| 09.20–09.45 |
Multi-omics of germline-restricted chromosomes of passerine birds — Alexander Sang-Jae Suh, Max Planck Institute |
Pangenome language models — John Lees (EMBL-EBI) |
| 09.45–10.10 |
Parasitism Islands: the role and regulation of gene organisation in parasitism — Vicky Hunt, University of Bath |
Application of AI for integration of clinical and genomic data enables precision diagnostics — Sarah Ennis (Southampton) |
| 10.10–10.25 |
Identifying G-protein Coupled Receptors in Mnemiopsis leidyi using Bioinformatic Approaches — Aidan Pugh |
NORA: A Nanopore Oncology Reasoning Agent for Evidence Validation in Cell-Free RNA Liquid Biopsy — Somayah Albaradei |
| 10.25–10.40 |
Developing a transcriptomics toolbox for aquatic animal health — Richard Hill |
Accelerated genome containment estimation using syncmers — Bede Constantinides |
| 10.40–10.55 |
Comparative Genomics Reveals the Evolutionary History of Visual Opsins in Hoverflies — Elena Rosca |
Lineage-Specific Marker Discovery — Sahra Musse |
| 11:00–11:30 |
Coffee Break |
|
| 11:30–13:00 |
Spatial Genomics (Chair: Sally James) |
Microbial Genomics (Chair: Lauren Cowley) |
| 11.30–11.55 |
Decoding leishmaniasis immunopathology through multi-omic analysis — Paul Kaye (University of York) |
Beyond genomic potential: resolving microbial function in a geothermal community — Sophie Nixon (University of Manchester) |
| 11.55–12.20 |
Title to follow — Nik Matthews |
The use of pathogen genomics in public health microbiology — Philip Ashton (University of Oxford) |
| 12.20–12.35 |
Goodbye, flat biology! Three-dimensional spatial transcriptomics — Julian Ashby |
Winter is Coming: Detecting Known and Unknown Respiratory Pathogens through Metagenomic Surveillance in the mSCAPE Project — Sam Wilkinson |
| 12.35–12.50 |
Multimodal Integration of Spatial Omics to Study Prostate Cancer Heterogeneity — Sara Karaoui |
The Evolution of Epidemic Pseudomonas aeruginosa — Fiona Poulter |
| 12.50–13.05 |
Integrating spatial and single-cell technologies to deconvolute the heart immune infiltrate during infectious cardiomyopathy — Aleksandra Dabek |
|
| 13:05–14:00 |
Photo, Lunch and Poster Session II |
|
| 14:00–15:20 |
Microbial Communities & Metagenomics (Chair: Nick Loman) |
Cancer & Ageing (Chair: Ania Piskorz) |
| 14.00–14.25 |
Doing metagenomics properly (or at least less badly) — Josh Quick (University of Birmingham) |
Genomics of ageing and cancer — Prof Joao Pedro Magalhaes (University of Birmingham) |
| 14.25–14.50 |
Microbiome Genomics for Public Health: Sequencing Everything, Deciding Nothing? — Al Darby (University of Liverpool) |
Title to follow — Dr Richard Mair (CRUK Cambridge Institute, University of Cambridge) |
| 14.50–15.05 |
An assessment of cell-based and DNA-based host depletion methods for enhancing genome coverage for pathogen identification in human blood — Emily Rowlands |
Read-level classification of glioblastoma DNA from nanopore methylation: a naive Bayes classifier benchmarked against ichorCNA — Andrew Gavin |
| 15.05–15.20 |
Demultiplexing errors as a source of false-positive detections in viral metagenomics — and how to prevent them — Dominika Stepniak (University of Birmingham) |
Ultra-long sequencing reveals the structural and epigenetic architecture of DUX4-rearranged acute lymphoblastic leukaemia — Steven Knox |
| 15:20–16:00 |
Coffee Break |
|
| 16:00–17:35 |
Evolutionary (Microbial) Genomics (Chair: Sophie Nixon) |
Human & Clinical Genomics (Chair: Jon Coxhead) |
| 16.00–16.25 |
Long-term trends in prokaryotic diversification through geological time — Tom Williams (Bath) |
Opportunities and challenges in implementation of pharmacogenomics at scale in a national health service — Bill Newman (Manchester Centre for Genomic Medicine – NHS) |
| 16.25–16.50 |
Secret Lives of Microbial Mobile Genetic Elements — Jamie Hall (Liverpool) |
Translating genomics into population health benefit and impact for patients and communities — Saskia Sanderson (Kings College London) |
| 16.50–17.05 |
A Forward Genetics Approach to Investigate Gain-of-Virulence in Zymoseptoria tritici to the Cougar Resistance QTL — Lisa Lamberte |
Long-read Sequencing in Circulating Tumour DNA (ctDNA) Lung Cancer Liquid Biopsies — Sophie Shaw |
| 17.05–17.20 |
Title to follow — Danna Gifford |
Development and Evaluation of a Dual-PLatform Clinical Metagenomics Pipeline for Respiratory Pathogen and Resistome Profiling - Umang Uniyal |
| 17.20–17.35 |
Title to follow — Matthew Thomas |
Telomere-to-telomere assembly reveals the molecular architecture of the rare constitutional dicentric chromosome rob(15;21)c — Steven Knox |